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LOCUS NM_001103411 3388 bp mRNA linear INV 26-DEC-2023 D (CG44774), mRNA. ACCESSION NM_001103411 VERSION NM_001103411.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3388) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3388) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3388) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3388) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3388) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3388) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3388) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3388) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3388) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3388) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3388) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3388) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3388) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3388) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3388) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3388) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3388) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001103411.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3388 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3388 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /map="4D6-4D7" /db_xref="FLYBASE:FBgn0266000" /db_xref="GeneID:31424" CDS 600..2468 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="CG44774 gene product from transcript CG44774-RD; CG44774-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001096881.1" /db_xref="FLYBASE:FBpp0309837" /db_xref="GeneID:31424" /db_xref="FLYBASE:FBgn0266000" /translation="MFNFHKPRVYRSADGCCICRAKSSSSRFTASRKYEKESMQCFNL NEPRNGEICNACVLLVKRYKRLPIGSKRHWGHVVDARAGPGTKSMAKQKKRDNADAKS RAANGSGNSFLPEKFAKNRKSKERAATEAAAARPSSLSLSTSAVNRPSSTSPTSDHQH SDSNESYDDEQTLPANKPYQTRKRTAAAALATANESKEPNNKRPKLTGSYRRRQLVPQ KNRRSVDNIPFFEENDLVRLEVCCGVVFQSLSLGSTYYIIDPELYKPCAKHQRIRHQQ MQLQLQHQQAEAVNATPTPTTTPTVTTNSSPHTTQVQSKVPTIGPLKKHHLFCKRQSG SFPQGEIHSISPIPMSKTETDGQPLSPKPHSTLSLILKPTVQMQQQQPQSQAQSQVVS VGAASPSSLSSLSNCSTSSSVATKFNDNSSDSGFDEHVLERKSVSPPTQDECKLRGTT GGRVQLILVSGLPLAGQSQNLMLAGNEFTARIVQQREAGIAAATAAGAGTGTPSTGAT PLKINVLGGSQGNSNKMRAIFNSASSIQHENGVTTIVPASSLAASNQTAAMNAIAPST VTITPSSVGKKVTVPNPKFILLKPAKFVGPASANEVNTATLTAEPHAPPPPQAKIV" misc_feature 603..1406 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="Protein Family FAM60A; Region: FAM60A; pfam15396" /db_xref="CDD:464703" ORIGIN 1 agttggcctt tcgggtttct agcgtgcgca cgtgttttag ttgttctcct caactaacct 61 taaatttgaa aaataaaaaa aagtgattta aattgttgct aagtaaatag caacaaaaat 121 gtcggtttat ctgagcacaa atgcagccag ctacagtgaa gcctggacaa tggatgttgg 181 caatgcacgc gctcagaaca acgggtgcaa agggaaaaag cgcgcacaaa taacactagc 241 acaataacag tgaacaccgt cgcagcacac accaaacaca gaaacccgaa ttgccactca 301 aaacactttc caaaaacaaa gaagaaacat cattttaaat caagcaagga aagcaaaaaa 361 cattaaaagc gtaaaaaaaa atagaaaaaa agcattaaaa gcgtaaaaaa aggaaaaaaa 421 aaaaaaaaac aaaacattaa aagcgtcaaa aaaaaaaaag aggaaaaaaa cattaaaagc 481 gtaaaaaaga gagaaaaaaa agaacaggaa aatatagtca tcgtaaatca ttgtgaaatc 541 tccacggaac attgaaaacc caaatatcaa aaccacaaac atactccaat aacaaagcca 601 tgttcaattt tcataagcca cgcgtctacc gctctgcgga tggatgttgc atttgccggg 661 ccaagtcgag cagctcgcgc ttcaccgcct cccgcaagta cgaaaaggag tcgatgcagt 721 gctttaatct taacgagcct cgaaatggtg aaatctgcaa cgcctgcgtc cttttggtca 781 agcgctacaa gcgactaccc ataggtagta agcgtcactg gggtcatgtg gtggatgccc 841 gtgctggacc cggcaccaag tccatggcca aacagaagaa gcgcgacaac gcagacgcga 901 agagcagggc cgccaatggc agtggcaact cattcctgcc cgagaagttc gccaagaacc 961 gcaagagcaa ggagagagcg gcgactgaag cagcagcagc aagaccatca tcattatcat 1021 tatcgaccag tgctgtaaat cgacctagca gcacttcacc cacctcggat catcagcaca 1081 gcgattcgaa tgagagctac gatgatgagc agacgctgcc ggcaaataaa ccatatcaaa 1141 cgcgcaagcg aaccgcggct gccgcactag cgactgccaa cgaatcgaag gagcccaaca 1201 acaaacgtcc gaagttaacc ggcagctacc gacgtcgtca gctggtgcca caaaagaatc 1261 gtcggtccgt cgacaatatc cccttcttcg aggaaaatga tctcgttcgc ctggaggtct 1321 gttgcggtgt ggtcttccag agtttatccc tcggcagcac ttactacatc atcgatccgg 1381 agctgtacaa accgtgtgcg aagcaccagc gcatacgcca ccagcagatg cagcttcagc 1441 tgcaacatca gcaggcggag gcggtaaatg ccactccaac ccccacgacc actccaacgg 1501 tcacgaccaa ctcatcgcca cacaccactc aagttcaaag taaggtgcca acgattgggc 1561 cacttaagaa gcatcatttg ttctgcaagc gacaatcggg gtcatttccg caaggtgaaa 1621 tccatagcat aagtccaatt ccaatgagca agactgaaac ggacggccaa ccactgtcgc 1681 cgaagccaca ttccactctg tccctgatcc tcaagcccac cgtccaaatg caacaacagc 1741 aaccacagtc gcaggcccag agccaagtgg tctccgtggg cgctgcgtcg ccctcgtcgc 1801 tgtcctcctt gtccaactgc tccacctcgt cctcggtggc caccaagttc aacgacaatt 1861 cctcggattc gggattcgat gagcatgtgc tagagcgcaa gtcggtcagc ccaccaacgc 1921 aggacgagtg caaactgcgc ggaaccacgg gtggcagggt gcagctaatc ctagtcagcg 1981 gcctgcctct ggctggacaa tctcagaatc tgatgctggc gggcaacgag tttacggcac 2041 gtattgtgca gcaaagagaa gccggaattg cagctgcaac cgcagccgga gccggaaccg 2101 gtactccatc gacaggagca accccactca aaatcaacgt acttggcgga tctcagggca 2161 atagcaataa aatgcgtgct atattcaata gcgccagcag cattcagcat gagaacggcg 2221 tgaccaccat tgtgccagcc tcctcgttgg cagccagcaa tcaaacagct gccatgaacg 2281 caattgcgcc gagcacggtg actataacgc cgtcatcggt gggcaaaaag gtgacggtgc 2341 caaatcccaa gtttatcctg ctgaagccag ccaaatttgt gggaccagca tcggcaaacg 2401 aggtaaacac agcgactctg acggcggaac cacatgctcc tccccctcca caagccaaaa 2461 tcgtataggc gattgaaaac gaaagagaga gagatagata ggagatgtct agcgtctcgc 2521 agggaatata gtaaccaccc tgttacgttt gttatacact aagctattta acggcgaccg 2581 aaagccaagc tcccttcctt agccgcaggt tccatatcat tcaagagtaa tatttaacat 2641 ttcaaggaac accttagcct agacgttact ttagcctaga ctagagcact gaactacagt 2701 atgggcgaat gagtccacgc aaaactcaca cccacacaga gccatacaaa ttgtaacaat 2761 tattagtgtg ttaattgttt aatgtagcgc cccggtagcc tgtagtttga ctccaacaag 2821 ttcgctcctg gcgcttcaca ggcgctggaa aatcttaacc gccggaagtc acttccgctg 2881 gctttgattt tccagcgtca gtcaagcgga aggagggact tgtttgagtc caactacagg 2941 atactggggg gcccttaaga acagaatggg gaatgagtcc acgcaaaaca cacacccaca 3001 cacacacaga accatacaaa ttgtaaccat tatttgagtg ttaattgttg actgtagcgc 3061 cctggtagcc tgtagtttga ctccaacaag ttcgctcctg gcgcttcaca ggcgctggaa 3121 aatcttaacc gccggaagtc acttccgctg gctttgattt tccagcgtca gtcaagcgga 3181 aggagggact tgtttgagtc caactacagg atactggggg gcccttaaga acagaatggg 3241 gaatgagtcc acgcaaaaca cacacccaca cacacacaga accatacaaa ttgtaaccat 3301 tatttgagtg ttaattgttg actgtagcgc cctggtagcc tgtagtttga ctccaacaag 3361 ttcgctcctg gcgcttcaca ggcgctgg