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LOCUS NM_001103410 3384 bp mRNA linear INV 26-DEC-2023 C (CG44774), mRNA. ACCESSION NM_001103410 VERSION NM_001103410.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3384) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3384) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3384) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3384) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3384) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3384) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3384) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3384) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3384) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3384) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3384) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3384) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3384) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3384) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3384) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3384) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3384) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3384) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001103410.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3384 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3384 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /map="4D6-4D7" /db_xref="FLYBASE:FBgn0266000" /db_xref="GeneID:31424" CDS 596..2464 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="CG44774 gene product from transcript CG44774-RC; CG44774-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_001096880.1" /db_xref="FLYBASE:FBpp0309836" /db_xref="GeneID:31424" /db_xref="FLYBASE:FBgn0266000" /translation="MFNFHKPRVYRSADGCCICRAKSSSSRFTASRKYEKESMQCFNL NEPRNGEICNACVLLVKRYKRLPIGSKRHWGHVVDARAGPGTKSMAKQKKRDNADAKS RAANGSGNSFLPEKFAKNRKSKERAATEAAAARPSSLSLSTSAVNRPSSTSPTSDHQH SDSNESYDDEQTLPANKPYQTRKRTAAAALATANESKEPNNKRPKLTGSYRRRQLVPQ KNRRSVDNIPFFEENDLVRLEVCCGVVFQSLSLGSTYYIIDPELYKPCAKHQRIRHQQ MQLQLQHQQAEAVNATPTPTTTPTVTTNSSPHTTQVQSKVPTIGPLKKHHLFCKRQSG SFPQGEIHSISPIPMSKTETDGQPLSPKPHSTLSLILKPTVQMQQQQPQSQAQSQVVS VGAASPSSLSSLSNCSTSSSVATKFNDNSSDSGFDEHVLERKSVSPPTQDECKLRGTT GGRVQLILVSGLPLAGQSQNLMLAGNEFTARIVQQREAGIAAATAAGAGTGTPSTGAT PLKINVLGGSQGNSNKMRAIFNSASSIQHENGVTTIVPASSLAASNQTAAMNAIAPST VTITPSSVGKKVTVPNPKFILLKPAKFVGPASANEVNTATLTAEPHAPPPPQAKIV" misc_feature 599..1402 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="Protein Family FAM60A; Region: FAM60A; pfam15396" /db_xref="CDD:464703" ORIGIN 1 atacagtcac tagcagaacg tcaagttgat gtcagtagca atcaaaagtg aaaaggaagc 61 gaaaaagtgc attttaaact gaaaataaag tgtgataaat aacagttgta aaatcgagcg 121 gctcaaccaa gcacaaatgc agccagctac agtgaagcct ggacaatgga tgttggcaat 181 gcacgcgctc agaacaacgg gtgcaaaggg aaaaagcgcg cacaaataac actagcacaa 241 taacagtgaa caccgtcgca gcacacacca aacacagaaa cccgaattgc cactcaaaac 301 actttccaaa aacaaagaag aaacatcatt ttaaatcaag caaggaaagc aaaaaacatt 361 aaaagcgtaa aaaaaaatag aaaaaaagca ttaaaagcgt aaaaaaagga aaaaaaaaaa 421 aaaaacaaaa cattaaaagc gtcaaaaaaa aaaaagagga aaaaaacatt aaaagcgtaa 481 aaaagagaga aaaaaaagaa caggaaaata tagtcatcgt aaatcattgt gaaatctcca 541 cggaacattg aaaacccaaa tatcaaaacc acaaacatac tccaataaca aagccatgtt 601 caattttcat aagccacgcg tctaccgctc tgcggatgga tgttgcattt gccgggccaa 661 gtcgagcagc tcgcgcttca ccgcctcccg caagtacgaa aaggagtcga tgcagtgctt 721 taatcttaac gagcctcgaa atggtgaaat ctgcaacgcc tgcgtccttt tggtcaagcg 781 ctacaagcga ctacccatag gtagtaagcg tcactggggt catgtggtgg atgcccgtgc 841 tggacccggc accaagtcca tggccaaaca gaagaagcgc gacaacgcag acgcgaagag 901 cagggccgcc aatggcagtg gcaactcatt cctgcccgag aagttcgcca agaaccgcaa 961 gagcaaggag agagcggcga ctgaagcagc agcagcaaga ccatcatcat tatcattatc 1021 gaccagtgct gtaaatcgac ctagcagcac ttcacccacc tcggatcatc agcacagcga 1081 ttcgaatgag agctacgatg atgagcagac gctgccggca aataaaccat atcaaacgcg 1141 caagcgaacc gcggctgccg cactagcgac tgccaacgaa tcgaaggagc ccaacaacaa 1201 acgtccgaag ttaaccggca gctaccgacg tcgtcagctg gtgccacaaa agaatcgtcg 1261 gtccgtcgac aatatcccct tcttcgagga aaatgatctc gttcgcctgg aggtctgttg 1321 cggtgtggtc ttccagagtt tatccctcgg cagcacttac tacatcatcg atccggagct 1381 gtacaaaccg tgtgcgaagc accagcgcat acgccaccag cagatgcagc ttcagctgca 1441 acatcagcag gcggaggcgg taaatgccac tccaaccccc acgaccactc caacggtcac 1501 gaccaactca tcgccacaca ccactcaagt tcaaagtaag gtgccaacga ttgggccact 1561 taagaagcat catttgttct gcaagcgaca atcggggtca tttccgcaag gtgaaatcca 1621 tagcataagt ccaattccaa tgagcaagac tgaaacggac ggccaaccac tgtcgccgaa 1681 gccacattcc actctgtccc tgatcctcaa gcccaccgtc caaatgcaac aacagcaacc 1741 acagtcgcag gcccagagcc aagtggtctc cgtgggcgct gcgtcgccct cgtcgctgtc 1801 ctccttgtcc aactgctcca cctcgtcctc ggtggccacc aagttcaacg acaattcctc 1861 ggattcggga ttcgatgagc atgtgctaga gcgcaagtcg gtcagcccac caacgcagga 1921 cgagtgcaaa ctgcgcggaa ccacgggtgg cagggtgcag ctaatcctag tcagcggcct 1981 gcctctggct ggacaatctc agaatctgat gctggcgggc aacgagttta cggcacgtat 2041 tgtgcagcaa agagaagccg gaattgcagc tgcaaccgca gccggagccg gaaccggtac 2101 tccatcgaca ggagcaaccc cactcaaaat caacgtactt ggcggatctc agggcaatag 2161 caataaaatg cgtgctatat tcaatagcgc cagcagcatt cagcatgaga acggcgtgac 2221 caccattgtg ccagcctcct cgttggcagc cagcaatcaa acagctgcca tgaacgcaat 2281 tgcgccgagc acggtgacta taacgccgtc atcggtgggc aaaaaggtga cggtgccaaa 2341 tcccaagttt atcctgctga agccagccaa atttgtggga ccagcatcgg caaacgaggt 2401 aaacacagcg actctgacgg cggaaccaca tgctcctccc cctccacaag ccaaaatcgt 2461 ataggcgatt gaaaacgaaa gagagagaga tagataggag atgtctagcg tctcgcaggg 2521 aatatagtaa ccaccctgtt acgtttgtta tacactaagc tatttaacgg cgaccgaaag 2581 ccaagctccc ttccttagcc gcaggttcca tatcattcaa gagtaatatt taacatttca 2641 aggaacacct tagcctagac gttactttag cctagactag agcactgaac tacagtatgg 2701 gcgaatgagt ccacgcaaaa ctcacaccca cacagagcca tacaaattgt aacaattatt 2761 agtgtgttaa ttgtttaatg tagcgccccg gtagcctgta gtttgactcc aacaagttcg 2821 ctcctggcgc ttcacaggcg ctggaaaatc ttaaccgccg gaagtcactt ccgctggctt 2881 tgattttcca gcgtcagtca agcggaagga gggacttgtt tgagtccaac tacaggatac 2941 tggggggccc ttaagaacag aatggggaat gagtccacgc aaaacacaca cccacacaca 3001 cacagaacca tacaaattgt aaccattatt tgagtgttaa ttgttgactg tagcgccctg 3061 gtagcctgta gtttgactcc aacaagttcg ctcctggcgc ttcacaggcg ctggaaaatc 3121 ttaaccgccg gaagtcactt ccgctggctt tgattttcca gcgtcagtca agcggaagga 3181 gggacttgtt tgagtccaac tacaggatac tggggggccc ttaagaacag aatggggaat 3241 gagtccacgc aaaacacaca cccacacaca cacagaacca tacaaattgt aaccattatt 3301 tgagtgttaa ttgttgactg tagcgccctg gtagcctgta gtttgactcc aacaagttcg 3361 ctcctggcgc ttcacaggcg ctgg