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LOCUS NM_001038732 3451 bp mRNA linear INV 26-DEC-2023 transcript variant C (Adar), mRNA. ACCESSION NM_001038732 VERSION NM_001038732.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3451) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3451) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3451) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3451) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3451) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3451) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3451) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3451) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3451) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3451) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3451) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3451) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3451) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3451) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3451) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3451) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3451) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3451) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001038732.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3451 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3451 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="Adenosine deaminase acting on RNA" /map="2B9-2B9" /db_xref="FLYBASE:FBgn0026086" /db_xref="GeneID:31130" CDS 503..1063 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /EC_number="3.5.4.37" /EC_number="3.5.4.4" /note="CG12598 gene product from transcript CG12598-RC; CG12598-PC; Adar-PC; hypoxia, anoxia, sensitive 2; adenosine deaminase acting on rna; hypnos-2; adenosine deaminases acting on RNA" /codon_start=1 /product="adenosine deaminase acting on RNA, isoform C" /protein_id="NP_001033821.1" /db_xref="FLYBASE:FBpp0100009" /db_xref="GeneID:31130" /db_xref="FLYBASE:FBgn0026086" /translation="MLNSANNNSPQHPVSAPSDINMNGYNRKLPQKRGYEMPKYSDPK KKMCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRS KKVARIEAAATALRSFIQFKDGAVLSPLKPAGNLDFTSDEHLENGIENLSSSKMFEII QTMLTEKLSNPTSLEQPTFCMSQSKY" misc_feature 668..856 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(668..670,677..682,689..694,698..700,740..745, 749..751,755..757,806..814,821..823) /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" ORIGIN 1 tattgtgata actgctcaca tcgctagatt ccgagcaaca aaaaagcgac gaagggtcat 61 tgttattttt tctaatgcaa tgtaatgcag caaatgtgca gatttgaaca agtgtaacgc 121 gatttatgtt taatccgcat cgaggaacca aatcgaagta aacgcgcggc cagagaaaag 181 agcagcaccg caccgaagat aaaacaaaca agcattgatt tgtttgtccg gccatgtcag 241 tgtgtgtgtc acaagggctt gcaagtgtgt gcgtgtgtcc gtgcgtgtac gtgggtgctt 301 ttttttttct cccgagtgcc gccaagtgaa atatgcaatt gcacgccact gcagttgcag 361 ccacacaaat cctatcctaa tcgacgaaac agcgaagcga ggaggctaga atcggctgcc 421 caacgaagag agcagaaccg ttaacaaatg acactctgcc gatacagcga agtaaaaatc 481 aataattaga gcaaaaagag tcatgttaaa cagcgctaat aacaattctc cccagcaccc 541 ggtgagtgca ccatccgata tcaacatgaa tggctataac cgaaaattgc cacaaaaacg 601 tggctatgag atgccaaaat actctgatcc aaaaaagaaa atgtgcaagg agcgcattcc 661 ccagccgaag aacacggtgg ccatgctgaa tgagctaaga catggactga tttacaaatt 721 ggagtcacag actggtccgg tacacgcacc tctattcacg atatccgtgg aggtcgatgg 781 acagaaatac ttgggccagg gccgtagtaa aaaagttgca cgcatcgaag cagcagcaac 841 tgcactgcgc agctttatac agtttaagga tggagcagtt ctgtcgcctc tgaagccggc 901 gggcaacttg gactttacca gcgatgaaca tcttgaaaat ggtattgaaa atttgtccag 961 ttcaaaaatg tttgagatca ttcagacgat gttgactgaa aagctatcca accctacctc 1021 gcttgaacaa cccacgtttt gcatgagtca gagcaagtat tagtgttttt atcctctttt 1081 gttaattatt ttaatttatt atttaatata atttattctg gaaccttatg cgttgtggcc 1141 atatcaaaga tgtctccatt catctaatag caatgttttg gccgaatatc caatagtatc 1201 ggccatgtca caaaatcaat tgttatcaat gattttaagc aaatatgtat gtttaaagtg 1261 ccgtaaggtt cgcaatgttg attttggtat cgtttgtgtt atttgtatga gagcacacac 1321 agctcatttg gactgaagtt tttataggcc aaagagaatg ctttttactt actgaaccca 1381 tttttaataa ataacccaac aatcggctac taaaaggcct cggtgtactt gagtcctgtt 1441 tttctcttgt tttttttttt tttttttttt tttcctttta ttaatgcgcc ttattcagca 1501 cattatgctt aatagagcaa ccaattctgt gcttcagtgt cgtacgctta cttaaattga 1561 ctttcattgg ttgatctcta cgtttttata agtttcttgt gtttcttgtt cattgttccc 1621 ctcgcgtttg tctgatatgg ctagagacca ctattgcgtc tgaaataaga ttagaaaact 1681 aaggcgtagc ttcagagtga cgagcagtca aatatcccca gctaattttg ttttatattg 1741 ctagatgtca gcaaaagtgc tattactgtt gacggtcaga agaaggttcc agataagggt 1801 cctgtcatgc tcctctacga attatttaat gacgttaatt tcgaatgcat taatattgac 1861 ggcgcccaga acaattgtcg cttcaaaatg accgtcacaa tcaacgaaaa gaagttcgat 1921 ggaacaggtc cttccaaaaa gacggcgaaa aatgcggcag ctaaggcggc acttgcttcg 1981 ttatgcaata tttcctacag tccaatggtg gtgccacaga agaacgtacc cctgccaatc 2041 gacgacaagt cgtcatcgat ggagttgcct cagatacacg cggatacgat tggtcggttg 2101 gtcttagaaa agttcatgga agtaatcaag ggccaggagg cttactcgcg tcgaaaggta 2161 ttagcgggca ttgtaatgac tgaaaacatg aatttttgtg aagccaaagt tatttcagtt 2221 tcgacgggca ccaagtgtgt cagcggtgag catatgagtg tgaacggagc tgtcctaaat 2281 gattcccatg ctgaaatagt ctccaggcgt tgtcttctca aatatttata tgcacagctg 2341 gaccttcagt gcaatcaggc cacagcatat cagtcgattt tcgtgaggaa tactgatggg 2401 caataccctt ataaactaaa atccggggta catttccatt tgtatataaa tacagcacct 2461 tgtggggatg cacggatatt tagtcctcac gaaaacgaca ctggtgttga taaacatcca 2521 aatagaaaag ctcgtggcca gctgcgcacc aaaatcgagt ccggtgaggg gacgattcca 2581 gtgaaaagca gtgatggtat ccagacgtgg gatggcgtat tgcagggcca acgcctgcta 2641 acaatgtcgt gctcggataa aattgcccgt tggaacatcg tgggcatcca aggctcacta 2701 ttgtcttcca taattgaacc ggtgtacctg cattcgattg tgctgggaag cctgttgcat 2761 ccggagcaca tgtaccgcgc agtttgcggc cgaattgaga agtccattca aggcctgcca 2821 ccgccgtacc atctgaacaa gccgcgcctg gcactagtca cttcggccga gccgcggaat 2881 caggccaagg ctcccaactt cgggatcaat tggaccattg gggacaccga gctggaagtg 2941 gtgaactcgc taaccggtcg aaccattggc ggccaggtgt ctcgcatcac aaagcaggcg 3001 tttttcgtta agtatggatt tctaatggca aacttgcccg gtattttagt ccgcaaagta 3061 accactgact atgggcaaac caaagctaac gttaaggact atcagatcgc aaagctagaa 3121 ttgttctctg cattcaagcg agaagacctt ggcagctggc tgaagaaacc cattgaacaa 3181 gacgagttcg gtcttgccga atgactgcac tcagcactat tatataattt taaaaaagac 3241 aacagcaacg gcaagcaatt aatagaatta gacgacatag attttatgac aaattctgat 3301 atagaatgca aattatattg ggtgcaagca catcgctatg atataccact tcatatgatt 3361 gacaacctgc caactttgcg tacccattgc aatagcaagc acaaagatgc ttatgctcga 3421 aatataaaga acagctctag aatatttata g