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LOCUS NM_001038729 1544 bp mRNA linear INV 26-DEC-2023 H, mRNA. ACCESSION NM_001038729 VERSION NM_001038729.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1544) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1544) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1544) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1544) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1544) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1544) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1544) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1544) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1544) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1544) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1544) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1544) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1544) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1544) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1544) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1544) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1544) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1544) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001038729.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1544 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1544 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="SKP1-related A" /map="1B14-1B14" /db_xref="FLYBASE:FBgn0025637" /db_xref="GeneID:31016" CDS 755..1243 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="CG16983 gene product from transcript CG16983-RH; CG16983-PH; SkpA-PH; Skp1-related gene A; skpA; SCF-betaTrCP complex" /codon_start=1 /product="SKP1-related A, isoform H" /protein_id="NP_001033818.1" /db_xref="FLYBASE:FBpp0099971" /db_xref="GeneID:31016" /db_xref="FLYBASE:FBgn0025637" /translation="MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIV PLPNVNSTILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLFEL ILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEEQVRKENEWCE EK" misc_feature 764..1132 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins; Region: BTB_POZ_SKP1; cd18322" /db_xref="CDD:349631" misc_feature order(827..832,842..844,854..856,866..874,887..889, 893..898,1064..1066,1073..1078,1082..1084) /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="cullin binding site [polypeptide binding]; other site" /db_xref="CDD:349631" misc_feature order(1040..1042,1052..1054,1064..1066,1073..1075, 1088..1090,1100..1102,1109..1114,1118..1123,1130..1132) /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="F-box protein binding site [polypeptide binding]; other site" /db_xref="CDD:349631" misc_feature 1088..1231 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="Skp1 family, dimerization domain; Region: Skp1; pfam01466" /db_xref="CDD:460222" ORIGIN 1 ttagagtttc gccatctggt cactatagcc gtttcgtttt ttacgtgagt attgtgaatt 61 tggtgtgttg atttatatct cagttggagc ctgcgtggaa atagtgtcag tacgtttaaa 121 ggcatcatcg taaggttagt cggaaaacaa ataaaaagcc tacaaatagc aagcaagaac 181 gctttcgcaa ccacaagaaa aacgaacata cgcacgcatc catctgtggt agagtcggct 241 tgtgtggggg tgagtggatg tgtgggtgag catttctgga aagtgccgtt ctctatgttt 301 cgattctact tatcccttca tcaccatttc atcgttgaat catcacgaaa gaaacatcga 361 aagtgcacaa tcgtttgtta tctttgtacg aaaacaacgg tgatttccac acaggcataa 421 cctgcaagag taatacgata caaattttga tctgatatga cctcatttta gtcggtttga 481 attttaaaga gagcgactct gcaaactgca gggatatgaa catacaaaat tcacaaatga 541 ttgtttgcat cctagttgct tatattcatt tacacgcatg cttatatgct tacatctgtt 601 atcaataatt gacgacttgg tgcatgcgaa gcaaacgcat tgaaatgact attgggatcc 661 acacactgtt aaaaaacaca ctgattgcac tgccacacat ttctcaacta gaacctaatg 721 ttttatactg aacttaactg caggaaagcc caaaatgccc agcatcaagt tgcaatcttc 781 ggatgaggag atctttgaca cggatatcca gatcgccaag tgctccggca ctatcaagac 841 catgctggag gactgcggca tggaggacga tgagaatgcc attgtgccgt tgcccaatgt 901 gaattcgacg attcttcgca aggtgcttac ctgggctcac taccacaagg acgaccccca 961 gccaacggag gatgatgaga gcaaggagaa gcgcacagac gacattatct catgggatgc 1021 agatttccta aaagtcgacc agggcacact gtttgagctg atattggcag cgaactatct 1081 ggacattaag ggccttctgg agctcacctg caagactgtt gcaaacatga ttaagggaaa 1141 gactcccgag gaaatacgca agaccttcaa cattaagaag gacttttcgc ccgccgagga 1201 ggagcaggtg cgcaaggaga acgagtggtg cgaggagaag taaagcgcgg catttcgcgg 1261 gaccaacatt aagttgaaac agctagggga ttcgggaacg aattggattt gcagcattgc 1321 aactttactt agttgctact ttcatttaca ttttttttta tttttaaccc cagcagagac 1381 tcgatttaaa ttgtgtataa atgatctgtt gctgatttga ttcgcggggt tcattttttg 1441 tcgtaaatat atctcatata catacatatg cgagattgta acactctctt taacctattg 1501 gagtaacact tgatttcact ttaataaata taactaccca acac