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LOCUS NM_001014719 2006 bp mRNA linear INV 26-DEC-2023 (HIP-R), transcript variant D, mRNA. ACCESSION NM_001014719 VERSION NM_001014719.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2006) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2006) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2006) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2006) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2006) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2006) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2006) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2006) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2006) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2006) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2006) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2006) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001014719.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2006 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2006 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Hsc/Hsp70-interacting protein related" /map="3F1-3F1" /db_xref="FLYBASE:FBgn0029676" /db_xref="GeneID:31335" CDS 64..1197 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="CG2947 gene product from transcript CG2947-RD; CG2947-PD; HIP-R-PD; anon-fast-evolving-1A9" /codon_start=1 /product="Hsc/Hsp70-interacting protein related, isoform D" /protein_id="NP_001014719.2" /db_xref="FLYBASE:FBpp0305905" /db_xref="GeneID:31335" /db_xref="FLYBASE:FBgn0029676" /translation="MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGG TVPPGQFNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGVIE ADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGNA LFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLR QACKLDFDEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEKH NASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYN LIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDGLD" misc_feature 91..204 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; Region: Hip_N; cd14438" /db_xref="CDD:271228" misc_feature order(91..93,97..105,109..114,121..126,142..144,154..156, 163..168,172..180,184..204) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:271228" misc_feature 439..525 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(442..444,451..456,463..468,472..474,544..546, 553..558,565..570,574..579,646..648,655..660,667..672, 679..681) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature <478..870 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; Region: NlpI; COG4785" /db_xref="CDD:443815" misc_feature 538..630 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 643..729 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 958..1071 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Heat shock chaperonin-binding motif; Region: STI1; smart00727" /db_xref="CDD:128966" ORIGIN 1 tgcataccaa tcgatagggc agagcaaaaa tctgaaaaca tcgagacaaa acggaattca 61 gaaatggctt tcacaatgca aaccggggat ctgaagaagc tgaagtactt catcgacttt 121 gcgcttgaga atcccacctt cttgaacatg ccgcagctgc agttcgtcaa agatttcgtg 181 gagaagtttg gtggcacggt gccgcctggc caattcaacg gtggcagcgc cggaggcaag 241 tgcccattcg gcggtgttgc tggtgccaag gccaacgagc cggccaatgc ccccgaggat 301 agcgaggacg aaaagtccct ctccgatcct gagtcggacg tggagctgga catggagggt 361 gtgatcgagg cggacagcga ccccgcccaa cccatgggca actacagcaa gaaggccacc 421 gaagaggagg tggagcaggc gagcgagctg cgcgcccagg cggcctccgc ttacggccag 481 cagaagttcg acgaggccat cgccttgtac accaaggcca ttgaactgag cccgggtaat 541 gcccttttcc acgctaagcg tggtcaggcc ttcctcaagc tgaagaagcc gaatgcctgc 601 attcgggact gcgacgtggc gctggaactc aactcggatt tggcggctgg ctacaagttc 661 aggggacgcg cccgtcgcct cctcggagat tttgagctgg ctgcccatga tttgcgccaa 721 gcatgcaagc tggactttga cgaggagaca gacgagtggc taaaggaggt cactccgaat 781 gccaagaaaa tcgagcagca tcgcttgaag caggagcgtc gccaggcaga gcgtaagatc 841 aaggaacgcc agcgggatca gaggcgcgca cgtaaggagc aggaaaagca caatgccagc 901 tctggtggat catctggaga attttccggt gggaatcctg gtaacggaaa tatgtctgat 961 atactgggcg ccatgtcaga tcccgaggtg tcagccgcca ttcaggacat tttgtcaaat 1021 ccgggtaaca tcacaaagta cgcgtcgaac ccgaagatat acaaccttat caagaagatt 1081 gtgcccggtg gagatgtggg tgctgccttt ggccaagcgg gtgaaaaggc tggaaagccg 1141 agcgagccta agcctaaaaa ggactccgcc gacttcgtcg atgacggttt ggactaaggt 1201 ttagaaatgg ggcagtagta agactgaaac atgcgtcgat aaaaagaagt taacaaccaa 1261 ttacacgaaa tcgagcgaga ttacaaaaca acaaagaaag agaaagcaac agagtgcggt 1321 gaagaagatg gactacacga aaaacaaaag ggaaagcggc tgccttacac atttttgcag 1381 ctgagaaaaa acaaacattt cctaagcttt aacttaacca acacgtaaaa gaacgggcga 1441 caatggagaa aattcaaata ttcaaaatac tacaagcagt cagaagaata agcaacattt 1501 atttaaatcg agaagaaaga gatgttggag atgctggaga cgcttcttca catattattg 1561 aaaagcatac ttgcggccat taaagtggca aatgaaacta tacaaaggag ctagaatatg 1621 cttaaaaact tatcacattt gcagttcaca ggtaaatcaa aagattgtcc tgtgacgaac 1681 aaaacataaa tgtttagacg tcaagtcaga ttcaagggtg ccgatcgatc tagttgaact 1741 aaagctcgag aaacaaccaa aagaaaataa aaaatatata tatgttcaat aatattagcc 1801 taaattaccg agaacgaaga aacggataaa actaatcgca tcatttggtc aaacaaaatt 1861 gtactgagta ggatttaaat catattgtaa gcaaatgcat ttagcccccc aacatgaaag 1921 caatcgccca ttcattcaca cactcattca cacactcatt caaccagtga tcaatggaaa 1981 taaataaacg aatcaacaag aacccg