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LOCUS NM_001014713 2602 bp mRNA linear INV 26-DEC-2023 transcript variant B, mRNA. ACCESSION NM_001014713 VERSION NM_001014713.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2602) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2602) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2602) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2602) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2602) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2602) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2602) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2602) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2602) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2602) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2602) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2602) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2602) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2602) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2602) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2602) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2602) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2602) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001014713.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2602 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2602 /gene="elav" /locus_tag="Dmel_CG4262" /gene_synonym="44C11; 9F8A9; CG4262; dHuR; Dmel\CG4262; EC7; EG:65F1.2; Elav; ElaV; ELav; ELAV; elav-1; elav-2; elav-3; Elav-9F8A9; END1-2; fliJ; l(1)1Be; l(1)EC7; l(1)G0031; l(1)G0319; weg" /note="embryonic lethal abnormal vision" /map="1B7-1B8" /db_xref="FLYBASE:FBgn0260400" /db_xref="GeneID:31000" CDS 221..1660 /gene="elav" /locus_tag="Dmel_CG4262" /gene_synonym="44C11; 9F8A9; CG4262; dHuR; Dmel\CG4262; EC7; EG:65F1.2; Elav; ElaV; ELav; ELAV; elav-1; elav-2; elav-3; Elav-9F8A9; END1-2; fliJ; l(1)1Be; l(1)EC7; l(1)G0031; l(1)G0319; weg" /note="CG4262 gene product from transcript CG4262-RB; CG4262-PB; elav-PB; embryonic lethal abnormal visual system; weniger; embryonic lethal abnormal vision; embryonic lethal, abnormal vision; embryonically lethal abnormal vision" /codon_start=1 /product="embryonic lethal abnormal vision, isoform B" /protein_id="NP_001014713.1" /db_xref="FLYBASE:FBpp0099643" /db_xref="GeneID:31000" /db_xref="FLYBASE:FBgn0260400" /translation="MANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVAA AAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAA AVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDE IRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNV LNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRIL QNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQ PQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLAS GPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYD EAAMAIRALNGYTMGNRVLQVSFKTNKAK" misc_feature 644..1657 /gene="elav" /locus_tag="Dmel_CG4262" /gene_synonym="44C11; 9F8A9; CG4262; dHuR; Dmel\CG4262; EC7; EG:65F1.2; Elav; ElaV; ELav; ELAV; elav-1; elav-2; elav-3; Elav-9F8A9; END1-2; fliJ; l(1)1Be; l(1)EC7; l(1)G0031; l(1)G0319; weg" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" ORIGIN 1 cccagaagca tcctgttcct gtgacgcagc ggatctggtc tcgcgttcgc tccactacct 61 ccacttccta cacctacagt acacatatca catgaactta aaactagtga acggattaat 121 taaaaaggaa tcgcaaaaca aaagctcgct aatcgcgcag acacagcaga agcttaaatt 181 cagaaaagtt tagttcttca gtgccgaagt ggactttatt atggcaaata ccggagctgg 241 cggcggagta gacacacagg cacagctaat gcagagtgcc gctgcagccg cagcagtggc 301 ggcaacaaac gcggccgccg ctcccgtaca gaatgcagcc gccgtggcgg ccgccgccca 361 gctgcagcag caacaggtgc aacaggcaat cctgcaggtg cagcagcagc agacacagca 421 agcggtggcc gcggccgctg ccgcagtgac ccagcagctc caacagcaac agcaggctgt 481 cgtggcccaa caggctgtag tgcagcagca acaacagcag gcggcggcag tggtgcaaca 541 ggcggcggtc caacaggctg tggtgcccca gccgcagcag gcgcagccca atacgaatgg 601 caatgcagga tcgggatcgc aaaatggcag caacggcagc acggagacgc gcacaaacct 661 tattgtcaac tacttgccgc aaacaatgac cgaagacgag atccgttcgc tcttctccag 721 cgtcggcgag attgagtcgg tgaagctgat acgcgacaag tcgcaggtct acatcgatcc 781 tctcaatccg caggcgccca gcaagggcca aagtctgggc tacggctttg ttaactatgt 841 ccggccgcaa gatgccgagc aggctgttaa tgttctaaac ggcctgcgac tgcagaacaa 901 aaccataaag gtgtcgtttg cccgcccgtc gtccgatgcc attaaaggcg ccaaccttta 961 tgtgtcgggg ctgccaaaga cgatgaccca gcaggaactg gaggccatct tcgcaccatt 1021 cggagcaata atcacatcgc gcattctgca gaacgctggc aacgatacgc agacgaaagg 1081 agtaggcttt attcgattcg ataagcggga ggaggccaca agggctatca ttgccttgaa 1141 cggtactaca ccatccagct gcacagaccc catagtggta aaattctcca atacgcccgg 1201 cagcaccagt aagatcatcc agccgcagct gcccgctttc ctcaatcccc aactggtgcg 1261 acgcatcggg ggcgccatgc acacgccagt taacaagggt ctggcccggt tttcaccaat 1321 ggcgggcgac atgctggacg taatgctgcc caatggacta ggagcggcgg cggcggcggc 1381 cacaacgctg gccagtgggc ctggcggcgc gtatcccatt ttcatctaca acttggcgcc 1441 ggaaacggag gaggctgccc tgtggcagct gtttggtcca tttggagctg tgcaatcggt 1501 aaagattgtc aaggatccca caacgaatca gtgcaagggc tacggcttcg tttcgatgac 1561 caactacgat gaggcggcca tggccattcg ggcgctcaac ggctacacca tgggcaatcg 1621 ggtgctgcag gtcagcttca agaccaacaa agccaagtag agcggcccaa atggaagtgg 1681 acaaggacgc agcgggagca ccagcaacca caacccatta tcttgaatct aaacctgacc 1741 acacaacaca catatataaa tatgcatggt ataacggtaa ctaagcgcaa caaaacagta 1801 tgtgtacaac acacaagaaa aaaacaagaa agtagcaggc aggagaaaat actctttcca 1861 ctaaacgaca acgaaacggc ggaaatcccc ctaaaaacac aaatctcctc cccaaaaccg 1921 ccggccaaaa gcgttgcaat agaaaaattc ttcttgttta gcatttaagt aaaaaacctt 1981 aactaaacga agcgagcaga agaagttata agatcgggag aagcgaatag gtagggggtt 2041 gagaaagaac aatgagattt taagaaataa tattgcaaaa tgaaaacaca ctgtggcagt 2101 ggcagctgtg aaaggtcaaa ggttggcaca gtcgatctag tcacaaagca aaacaaagaa 2161 atcaaccaaa caaacacaaa acacacaaaa acgaaaacaa atttaacttt attagcaaaa 2221 aagaaaatga gaaattttaa aaatttatta actttaagta aaacgcagca atgaaatctt 2281 ccaaacaaaa gaaagcaaaa cagcaaatct gtttgttaca cttcaacttt ttctaccata 2341 aaaactttga atcttgatac taaacctaaa gcagaattaa gaaaatagag gaattcagtg 2401 tctacacttt atacatgtac tgtgcttaca ggacaccagt ttggcttgat caaagagcgc 2461 aggataaaaa gtatttaagg ggcaattagg aggatcgcgc atataatagg tatatatgca 2521 taacatggag gctgctacag tattacaaga aacataaaaa ttaaaactat atacttaata 2581 aacgagcacg tttaataatt ct